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Cambridge University Press: New
York, 1996. 400 pp. ISBN 0 521 44561 2. $74.95.
This book describes the extremely powerful
techniques of molecular dynamics simulation. The techniques
involve solving the classical many-body problems in contexts
relevant to the study of matter at the atomic level. The method
allows the prediction of static and dynamics properties of
substances directly from the underlying interactions between
molecules. This is, of course, a very broad subject and the author
has adopted a dual approach in that the text is partly
tutorial and also contains a large number of computer programs
for practical use.
Rapaport has adopted the attitude of trying the
simplest method first. Atoms are modeled as point particles
interacting through point potentials. Molecules are represented by
atoms with orientation dependent forces, or as extended
structures each containing several interaction sites. The
molecules may be rigid, flexible, or somewhere in between, and if there
are internal degrees of freedom there will be internal forces as
well. The intent of the book is not to discuss the design of molecular
models, but rather to make use of existing models, and
from a pedagogical viewpoint the simpler the model the better.
The aim of the book is to demonstrate the general
methodology of molecular dynamics simulation by example, not to
review the large body of literature covering the many different
kinds of models developed for specific applications.
The text is partly tutorial, but also contains a
large number of computer programs for practical use. This
volume will serve as an introduction to the subject for beginners
and as a reference manual for the more experienced
practitioner. The material covers a wide range of practical methods
and real applications and is organized as a series of case
studies. The typical case study includes a summary of the
theoretical background used for the formulation of the
computational approach. That is described by either a complete
program listing or a series of modifications or additions to a
program from an earlier case study. The initial conditions
of the model, organization of the input and output, accuracy,
convergence, and efficiency are also addressed for each case and, of
course, the results of the computation are given and discussed.
The book begins with the simplest case of basic
molecular dynamics, a sift-disk fluid. The development is discussed
in considerable depth to set the tone of the work. Later
chapters extend the basic model in various directions, deal with
various types of measurements, improve the computational
methods, and introduce new models for more complex
problems. These chapters also discuss the methodology for simulating
monatomic systems and focus on measuring the
thermodynamic and structural properties of systems in equilibrium.
Consideration is given to the dynamical properties of
equilibrium systems, including transport coefficients and
the correlation functions that characterize space- and time-dependent
properties. Chapters are devoted to the study of systems
under constant temperature and pressure and the dynamics of
rigid systems. It is difficult to cover all aspects of such a broad
topic as the subject of this book; and the author has not
attempted an exhaustive or encyclopedic coverage, but has produced
an excellent introduction to the subject.
The publisher has made the implementation of
the numerous programs essentially painless by making
them available via browser and the World Wide Web. The
easy availability of the software, written in C, was
welcomed by this old Fortran programmer. It is to be hoped that
this service is representative of a trend in technical publishing.
Overall this work is a pleasure to read and study and
would be a valuable addition to the library of both the
beginner and the experienced practitioner of the art.
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