|
Genomics is one of the most rapidly expanding areas
of science. This book is an outgrowth of a series of lectures
given by one of the former heads (CRC) of the Human
Genome Initiative. The book is designed to reach a wide
audience, from biologists with little chemical or physical science
background through engineers, computer scientists, and
physicists with little current exposure to the chemical or
biological principles of genetics. The text starts with a basic review
of the chemical and biological properties of DNA.
However, without either a biochemistry background or a
supplemental biochemistry text, this chapter and much of the rest of the
text would be difficult to digest. The second chapter is
designed to put DNA into the context of the larger chromosomal
unit. Specialized chromosomal structures and sequences
(centromeres, telomeres) are introduced, leading to a section on
chromosome organization and purification.
The next 4 chapters cover the physical
(hybridization, electrophoresis), chemical (polymerase chain reaction),
and biological (genetic) techniques that provide the backbone
of genomic analysis. These chapters cover in significant
detail the fundamental principles underlying each technique
and provide a firm background for the remainder of the
text. Chapters 79 consider the need and methods for the
development of physical maps. Chapter 7 primarily
discusses chromosomal localization techniques, including in situ
hybridization, FISH, and chromosome paintings. The next
two chapters focus on the development of libraries and
clones. In particular, Chapter 9 considers the limitations of
current mapping and clone production.
The current state and future of DNA sequencing
is covered in the next three chapters. The first considers
the current methods of DNA sequencing - especially
gel-based methods of analysis, although other possible approaches
(mass spectrometry) are introduced. Much of the chapter
addresses the limitations of current methods, including analysis of
error in sequencing and current bottlenecks in the
sequencing effort. The next chapter describes the steps necessary to
scale current technologies for the sequencing of entire genomes.
Chapter 12 examines alternate methods for DNA
sequencing. Initially, methods of single-molecule sequencing and
sequencing by microscopy are introduced; the majority of the
chapter is devoted to the development of DNA sequencing
methods using chip microarrays and hybridization.
The remaining chapters (13-15) consider the uses
and analysis of DNA sequence information. The initial focus is
on the identification of genes. Several examples are given of
the use of DNA sequence information for diagnosis of
inherited or infectious diseases. The sequence-specific manipulation
of DNA is discussed in Chapter 14. The final chapter deals
with the implications of large-scale sequencing, including
methods for identifying genes and finding errors in DNA
sequences, to the development of computer algorithms for the
interpretation of DNA sequence information.
The text figures are black and white line drawings
that, although clearly done, seem a bit primitive for 1999.
While I appreciated the simplicity of the drawings, many
students accustomed to more colorful presentations will find
them wanting. The four color figures in the center of the text
seem an afterthought and add little to the text's clarity.
Each chapter has a set of additional reading
sources, mostly primary sources. Often, specialized topics are
offset into boxes that provide clarification and amplification
without cluttering the text. An appendix includes a list of the
Web-based database resources.
As an undergraduate instructor who has
previously taught biochemistry, molecular biology, and a course on
the human genome, I found many interesting tidbits and
amplifications throughout the text. I would recommend this
book as a text for an advanced undergraduate or beginning
graduate course in genomics. Although the text works though
several examples of genetic and genome analysis, additional
problem/homework sets would need to be developed to
ensure student comprehension. The text steers clear of the ethical
implications of the Human Genome Initiative and remains true
to its subtitle The Science and Technology .
|